Publications

Lemaitre, N., Faure, E., Zamora, R., Archer, C., Sieber M., Ellwood, M., Hassler, C., Lin, Y., Cassar N., Maignien, L., and Vance, D. Biological impacts on the nickel cycle in the Southern Ocean: insights from isotopes and metagenomics. (2024). In review.
Miao, J., Chen, T., Misir, M., and Lin, Y. Deep learning for predicting 16S rRNA copy number. (2024) Scientific Reports. https://doi.org/10.1038/s41598-024-64658-5
Li, Z., Lin, Y., and Cassar, N. On the influence of phytoplankton size fractions on the carbon export ratio in the surface ocean. (2024) Ecological Modelling, 495, 110798.
Wen, X., Fang, C., Huang, L., Miao, J., and Lin, Y. A citizen science approach for mapping total microbial communities and waterborne pathogens in household drinking water in China. In review. Preprint in medRxiv. https://doi.org/10.1101/2023.10.16.23297104
Gu, S., Berthelot, H., Lin, Y., Tang, W., Robidart, J., Eren., A. M., Ducklow, H., and Cassar, N. Sedimentary diazotroph contribution to measurable N2 fixation in Antarctic waters. (2024) Communications Earth & Environment. In press.
Lombard, F., et al. Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems. (2023) Scientific Data, 10 (1), 324.
Lin, Y., Moreno, C., Marchetti., A, Ducklow, H., Schofield, O., Delage., E., Meredith, M., Li, Z, Eveillard, D., Shaffron, S., and Cassar, N. (2021) Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula. Nature Communications, https://doi.org/10.1038/s41467-021-25235-w.
Landwehr, S., et al. (2021). Biogeochemistry and Physics of the Southern Ocean-Atmosphere System Explored With Data Science. Earth System Dynamics, https://doi.org/10.5194/esd-2021-16
Brown, M., Bowman, J., Lin, Y., Feehan, C., Cassar, N., Moreno, C., Marchetti, A., and Schofield, O. (2021) Low diversity of a key phytoplankton group along the West Antarctic Peninsula. Limnology and Oceanography, 66(6), 2470-2480.
Gorsky, G., et al. (2019). Expanding Tara Oceans protocols for underway, ecosystematic sampling of the ocean-atmosphere interface during Tara Pacific expeditions. Frontiers in Marine Science. DOI: 10.3389/fmars.2019.00750
Lin, Y., Gifford, S., Ducklow, H., Schofield, O., and Cassar, N. (2019). Towards quantitative microbiome community profiling using internal standards. Applied and Environmental Microbiology, 85.5: e02634-18.
Wang, S., Lin, Y., Gifford, S., Eveleth, R., & Cassar, N. (2018). Linking patterns of net community production and marine microbial community structure in the western North Atlantic. ISME J., DOI: 10.1038/s41396-018-0163-4.
Lin, Y., Cassar, N., Marchetti, C., Moreno, A., Ducklow, H., and Li, Z. (2017). Specific eukaryotic plankton are good predictors of net community production in the Western Antarctic Peninsula. Scientific Reports, 7, 14845.
Moreno, C. M., Lin, Y., Davies, S., Monbureau, E., Cassar, N., & Marchetti, A. (2017). Examination of gene repertoires and physiological responses to iron and light limitation in Southern Ocean diatoms. Polar Biology, 1-18.
Eveleth, R., Cassar, N., Sherrell, R.M., Ducklow, H., Meredith, M.P., Venables, H.J., Lin, Y., Li, Z. (2016). Ice melt influence on summertime net community production along the Western Antarctic Peninsula. Deep Sea Research Part II: Topical Studies in Oceanography, 139, 77-88.
Larkin, A., Blinebry, S., Howes, C., Lin, Y., Loftus, S., Schmaus, C., Zinser, E., and Johnson, Z. (2016). Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific. ISME J., 10(7), 1555-1567.
Chandler, J., Lin, Y., Gainer, P., Post, A., Johnson, Z., and Erik, Z. (2016). Variable but persistent coexistence of Prochlorococcus ecotypes along temperature gradients in the ocean’s surface mixed layer. Environmental Microbiology Reports, 8(2), 272-284.
Ribalet, F., Swalwell, J., Clayton, S., Jiménez, V., Sudek, S., Lin, Y., Johnson, Z., Worden, A., and Armbrust, E. V. (2015). Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre. PNAS, 112(26), 8008-8012.
Jiao, N., Luo, T., Zhang, R., Yan, W., Lin, Y., Johnson, Z. I., Tian, J., Yuan, D., Yang, Q., Sun, J., Hu, D., and Wang, P. (2014). Presence of Prochlorococcus in the aphotic waters of the western Pacific Ocean. Biogeosciences, 11, 2391-2400.
Lin Y., Gazsi K., Lance V. P., Larkin A., Chandler, J., Zinser E. R., and Johnson Z. I. (2013). In situ activity of a dominant Prochlorococcus ecotype (eHL-II) from rRNA content and cell size. Environmental Microbiology. 15(10), 2736-2747.
Hunt, D. E., Lin, Y., Church, M. J., Karl, D. M., Tringe, S. G., Izzo, L. K., & Johnson, Z. I. (2013). Relationship between Abundance and Specific Activity of Bacterioplankton in Open Ocean Surface Waters. Applied and Environmental Microbiology, 79(1), 177-184. * co-first authors
Bittar, T. B., Lin, Y., Sassano, L. R., Wheeler, B. J., Brown, S. L., Cochlan, W. P., and Johnson, Z. I. (2013). Carbon Allocation under Light and Nitrogen Resource Gradients in Two Model Marine Phytoplankton. Journal of Phycology. 49(3), 523-535.
Johnson, Z. I., and Lin, Y. (2009). Prochlorococcus: Approved for export. PNAS, 106(26), 10400-10401.
Wang, D., and Lin, Y. (2007). A new species of Metacladophyton from the Late Devonian of China. International Journal of Plant Sciences, 168(7), 1067-1084.