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Faure, E., Pommellec, J., Noel, C., Cormier, A., Delpech, L., Eren, M., Fernandez, A., Vanni, C., Fourquez, M., Houssais, M., Silva, C., Gavory, F., Perdereau, A., Labadie, K., Wincker, P., Poulain, J., Hassler, C., Lin, Y., Cassar, N., Maignien, L. Water mass specific genes dominate the Southern Ocean microbiome. In review.
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Lemaitre, N., Faure, E., Zamora, R., Archer, C., Sieber M., Ellwood, M., Hassler, C., Lin, Y., Cassar N., Maignien, L., and Vance, D. Biological impacts on the nickel cycle in the Southern Ocean: insights from isotopes and metagenomics. In review.
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Gu, S., Berthelot, H., Lin, Y., Tang, W., Robidart, J., Eren., A. M., Ducklow, H., and Cassar, N. Evidence of limited N2 fixation in the Southern Ocean. (2025) Communications Earth & Environment, 6, 264.
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Miao, J., Chen, T., Misir, M., and Lin, Y. Deep learning for predicting 16S rRNA copy number. (2024) Scientific Reports. https://doi.org/10.1038/s41598-024-64658-5
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Li, Z., Lin, Y., and Cassar, N. On the influence of phytoplankton size fractions on the carbon export ratio in the surface ocean. (2024) Ecological Modelling, 495, 110798.
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Wen, X., Fang, C., Huang, L., Miao, J., and Lin, Y. A citizen science approach for mapping total microbial communities and waterborne pathogens in household drinking water in China. In review. Preprint in medRxiv.
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Lombard, F., et al. Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems. (2023) Scientific Data, 10 (1), 324.
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Lin, Y., Moreno, C., Marchetti., A, Ducklow, H., Schofield, O., Delage., E., Meredith, M., Li, Z, Eveillard, D., Shaffron, S., and Cassar, N. (2021) Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula. Nature Communications, https://doi.org/10.1038/s41467-021-25235-w.
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Landwehr, S., et al. (2021). Biogeochemistry and Physics of the Southern Ocean-Atmosphere System Explored With Data Science. Earth System Dynamics, https://doi.org/10.5194/esd-2021-16
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Brown, M., Bowman, J., Lin, Y., Feehan, C., Cassar, N., Moreno, C., Marchetti, A., and Schofield, O. (2021) Low diversity of a key phytoplankton group along the West Antarctic Peninsula. Limnology and Oceanography, 66(6), 2470-2480.
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Gorsky, G., et al. (2019). Expanding Tara Oceans protocols for underway, ecosystematic sampling of the ocean-atmosphere interface during Tara Pacific expeditions. Frontiers in Marine Science. DOI: 10.3389/fmars.2019.00750
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Lin, Y., Gifford, S., Ducklow, H., Schofield, O., and Cassar, N. (2019). Towards quantitative microbiome community profiling using internal standards. Applied and Environmental Microbiology, 85.5: e02634-18.
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Wang, S., Lin, Y., Gifford, S., Eveleth, R., & Cassar, N. (2018). Linking patterns of net community production and marine microbial community structure in the western North Atlantic. ISME J., DOI: 10.1038/s41396-018-0163-4.
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Lin, Y., Cassar, N., Marchetti, C., Moreno, A., Ducklow, H., and Li, Z. (2017). Specific eukaryotic plankton are good predictors of net community production in the Western Antarctic Peninsula. Scientific Reports, 7, 14845.
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Moreno, C. M., Lin, Y., Davies, S., Monbureau, E., Cassar, N., & Marchetti, A. (2017). Examination of gene repertoires and physiological responses to iron and light limitation in Southern Ocean diatoms. Polar Biology, 1-18.
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Eveleth, R., Cassar, N., Sherrell, R.M., Ducklow, H., Meredith, M.P., Venables, H.J., Lin, Y., Li, Z. (2016). Ice melt influence on summertime net community production along the Western Antarctic Peninsula. Deep Sea Research Part II: Topical Studies in Oceanography, 139, 77-88.
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Larkin, A., Blinebry, S., Howes, C., Lin, Y., Loftus, S., Schmaus, C., Zinser, E., and Johnson, Z. (2016). Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific. ISME J., 10(7), 1555-1567.
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Chandler, J., Lin, Y., Gainer, P., Post, A., Johnson, Z., and Erik, Z. (2016). Variable but persistent coexistence of Prochlorococcus ecotypes along temperature gradients in the ocean’s surface mixed layer. Environmental Microbiology Reports, 8(2), 272-284.
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Ribalet, F., Swalwell, J., Clayton, S., Jiménez, V., Sudek, S., Lin, Y., Johnson, Z., Worden, A., and Armbrust, E. V. (2015). Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre. PNAS, 112(26), 8008-8012.
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Jiao, N., Luo, T., Zhang, R., Yan, W., Lin, Y., Johnson, Z. I., Tian, J., Yuan, D., Yang, Q., Sun, J., Hu, D., and Wang, P. (2014). Presence of Prochlorococcus in the aphotic waters of the western Pacific Ocean. Biogeosciences, 11, 2391-2400.
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Lin Y., Gazsi K., Lance V. P., Larkin A., Chandler, J., Zinser E. R., and Johnson Z. I. (2013). In situ activity of a dominant Prochlorococcus ecotype (eHL-II) from rRNA content and cell size. Environmental Microbiology. 15(10), 2736-2747.
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Hunt, D. E., Lin, Y., Church, M. J., Karl, D. M., Tringe, S. G., Izzo, L. K., & Johnson, Z. I. (2013). Relationship between Abundance and Specific Activity of Bacterioplankton in Open Ocean Surface Waters. Applied and Environmental Microbiology, 79(1), 177-184. * co-first authors
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Bittar, T. B., Lin, Y., Sassano, L. R., Wheeler, B. J., Brown, S. L., Cochlan, W. P., and Johnson, Z. I. (2013). Carbon Allocation under Light and Nitrogen Resource Gradients in Two Model Marine Phytoplankton. Journal of Phycology. 49(3), 523-535.
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Johnson, Z. I., and Lin, Y. (2009). Prochlorococcus: Approved for export. PNAS, 106(26), 10400-10401.
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Wang, D., and Lin, Y. (2007). A new species of Metacladophyton from the Late Devonian of China. International Journal of Plant Sciences, 168(7), 1067-1084.