Publications

• Li, Z., Lin, Y., and Cassar, N. On the influence of phytoplankton size fractions on the carbon export ratio in the surface ocean. In review.

• Wen, X., Fang, C., Huang, L., Miao, J., and Lin, Y. A citizen science approach for mapping total microbial communities and waterborne pathogens in household drinking water in China. In review. Preprint in medRxiv. https://doi.org/10.1101/2023.10.16.23297104

• Miao, J., Chen, T., Misir, M., and Lin, Y. Deep learning for predicting 16S rRNA copy number. In review. Preprint in bioRxiv. https://doi.org/10.1101/2022.11.26.518038

• Gu, S., Lin, Y., Berthelot, H., Tang, W., Robidart, J., Eren., A. M., Ducklow, H., and Cassar, N. Sedimentary diazotroph contribution to measurable N2 fixation in Antarctic waters. In review.

• Lombard, F., et al. Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems. (2023) Scientific Data, 10 (1), 324

• Lin, Y., Moreno, C., Marchetti., A, Ducklow, H., Schofield, O., Delage., E., Meredith, M., Li, Z, Eveillard, D., Shaffron, S., and Cassar, N. (2021) Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula. Nature Communications, https://doi.org/10.1038/s41467-021-25235-w.

• Landwehr, S., et al. (2021). Biogeochemistry and Physics of the Southern Ocean-Atmosphere System Explored With Data Science. Earth System Dynamics, https://doi.org/10.5194/esd-2021-16

• Brown, M., Bowman, J., Lin, Y., Feehan, C., Cassar, N., Moreno, C., Marchetti, A., and Schofield, O. (2021) Low diversity of a key phytoplankton group along the West Antarctic Peninsula. Limnology and Oceanography, 66(6), 2470-2480.

• Gorsky, G., et al. (2019). Expanding Tara Oceans protocols for underway, ecosystematic sampling of the ocean-atmosphere interface during Tara Pacific expeditions. Frontiers in Marine Science. DOI: 10.3389/fmars.2019.00750

• Lin, Y., Gifford, S., Ducklow, H., Schofield, O., and Cassar, N. (2019). Towards quantitative microbiome community profiling using internal standards. Applied and Environmental Microbiology, 85.5: e02634-18.

• Wang, S., Lin, Y., Gifford, S., Eveleth, R., & Cassar, N. (2018). Linking patterns of net community production and marine microbial community structure in the western North Atlantic. ISME J., DOI: 10.1038/s41396-018-0163-4.

• Lin, Y., Cassar, N., Marchetti, C., Moreno, A., Ducklow, H., and Li, Z. (2017). Specific eukaryotic plankton are good predictors of net community production in the Western Antarctic Peninsula. Scientific Reports, 7, 14845.

• Moreno, C. M., Lin, Y., Davies, S., Monbureau, E., Cassar, N., & Marchetti, A. (2017). Examination of gene repertoires and physiological responses to iron and light limitation in Southern Ocean diatoms. Polar Biology, 1-18.

• Eveleth, R., Cassar, N., Sherrell, R.M., Ducklow, H., Meredith, M.P., Venables, H.J., Lin, Y., Li, Z. (2016). Ice melt influence on summertime net community production along the Western Antarctic Peninsula. Deep Sea Research Part II: Topical Studies in Oceanography, 139, 77-88.

• Larkin, A., Blinebry, S., Howes, C., Lin, Y., Loftus, S., Schmaus, C., Zinser, E., and Johnson, Z. (2016). Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific. ISME J., 10(7), 1555-1567.

• Chandler, J., Lin, Y., Gainer, P., Post, A., Johnson, Z., and Erik, Z. (2016). Variable but persistent coexistence of Prochlorococcus ecotypes along temperature gradients in the ocean’s surface mixed layer. Environmental Microbiology Reports, 8(2), 272-284.

• Ribalet, F., Swalwell, J., Clayton, S., Jiménez, V., Sudek, S., Lin, Y., Johnson, Z., Worden, A., and Armbrust, E. V. (2015). Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre. PNAS, 112(26), 8008-8012.

• Jiao, N., Luo, T., Zhang, R., Yan, W., Lin, Y., Johnson, Z. I., Tian, J., Yuan, D., Yang, Q., Sun, J., Hu, D., and Wang, P. (2014). Presence of Prochlorococcus in the aphotic waters of the western Pacific Ocean. Biogeosciences, 11, 2391-2400.

• Lin Y., Gazsi K., Lance V. P., Larkin A., Chandler, J., Zinser E. R., and Johnson Z. I. (2013). In situ activity of a dominant Prochlorococcus ecotype (eHL-II) from rRNA content and cell size. Environmental Microbiology. 15(10), 2736-2747.

• Hunt, D. E., Lin, Y., Church, M. J., Karl, D. M., Tringe, S. G., Izzo, L. K., & Johnson, Z. I. (2013). Relationship between Abundance and Specific Activity of Bacterioplankton in Open Ocean Surface Waters. Applied and Environmental Microbiology, 79(1), 177-184.  * co-first authors

• Bittar, T. B., Lin, Y., Sassano, L. R., Wheeler, B. J., Brown, S. L., Cochlan, W. P., and Johnson, Z. I. (2013). Carbon Allocation under Light and Nitrogen Resource Gradients in Two Model Marine Phytoplankton. Journal of Phycology. 49(3), 523-535.

• Johnson, Z. I., and Lin, Y. (2009). Prochlorococcus: Approved for export. PNAS, 106(26), 10400-10401.

• Wang, D., and Lin, Y. (2007). A new species of Metacladophyton from the Late Devonian of China. International Journal of Plant Sciences, 168(7), 1067-1084.